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Neuroimaging Data Processing/Print version
Reference material by Wikibooks contributors. This retains its source identity and is not 411 news reporting.
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Neuroimaging Data Processing Neuroimaging Data Processing/Print version
1. Introduction
2. Data
2.1 Storage
2.1.1 Filetypes
2.1.1.1 DICOM
2.1.1.2 NIfTI
2.1.1.3 AFNI
2.1.1.4 GIfTI
2.1.2 Organization
3. Processing
3.1 Steps
3.1.1 Discarding First Volumes
3.1.2 Despiking
3.1.3 Slice Timing
3.1.4 Realignment
3.1.5 Skull Stripping
3.1.6 Tissue Segmentation
3.1.7 Coregistration and Normalization
3.1.8 Field Map Correction
3.1.9 Physiological Noise Regression
3.1.10 Temporal Filtering
3.1.11 Smoothing
3.1.12 Surface Extraction
3.2 Tools
3.2.1 SPM
3.2.2 FSL
3.2.3 AFNI
4. References
5. Glossary