SPM/Atlases

Atlas tools Jülich probabilistic cytoarchitectonic maps (SPM Anatomy Toolbox) FreeSurfer cortical parcellations AFNI framework: 1 and 2 WFU PickAtlas IBASPM Template-O-Matic Toolbox FSL atlasquery SPM12 spm_atlas.m multi-species Scalable Brain Atlas Online Brain Atlas Reconciliation Tool (OBART) Sets of atlases Jülich probabilistic cytoarchitectonic maps (SPM Anatomy Toolbox) Atlases available from FSL, see also MGH CMA Harvard-Oxford Atlases Yeo's connectivity-based parcellation (cortical and MNI volumetric) LONI Atlases ICBM Atlases (original) ICBM Atlases (2009) Brain Development Atlases Mindboggle Allen Brain Atlas, (see also and ) IIT Human Brain Atlas Atlases with whole-brain coverage Talairach Daemon AAL Anatomical Automatic Labeling AAL2 New parcellation of the orbitofrontal cortex in AAL LONI Probabilistic Brain Atlas (LPBA40) (56 structures) SRI24 Atlas (group-wise average atlas with two parcellations based on AAL and LPBA40) "Hammers-mith atlas"; n30r83, see 1 & 2 Brainvisa Sulci atlas ICBM 152 Nonlinear atlases version 2009 (some variants with lobar parcellations) Group-level functional parcels Stanford atlas of functional ROIs Atlas of frequency of vascularization Innovation-driven co-activation patterns (iCAPs) from resting-state fMRI AICHA: atlas of intrinsic connectivity of homotopic areas Whole-brain atlases for specific populations Pediatric Brain Templates Infant Template, see Baboon MRI Atlas Whole-brain white-matter tract / diffusion-imaging atlases JHMI Human White Matter Probabilistic Atlases SRI24 Atlas (basic diffusion metrics) Whole-brain tissue-class atlases BrainWeb (One subject with 9 non-background tissue classes; 20 subjects with 11) ICBM 152 Nonlinear atlases version 2009 (Group-wise average atlas variants with GM, WM and CSF classes) LPBA40 (Group-wise average atlas with GM, WM and CSF classes) SRI24 Atlas (Group-wise average atlas with GM, WM and CSF classes) Atlases for specific regions Probabilistic atlas of the human cerebellum Connectivity-based cerebellar parcellation (see also this) Subthalamic nucleus atlas (see also ) Hippocampal subfield atlases Connectivity-based parcellation atlases ChroMa cerebellum atlas Probabilistic maps of visual topography in human visual cortex Human Motor Area Template (HMAT), Basal Ganglia Human Area Template (BGHAT), Sensorimotor Area Tract Template (S-MATT), Transcallosal Tractography Template (TCATT) Labelled individual images MICCAI 2013 Challenge Workshop on Segmentation: Algorithms, Theory and Applications ("SATA") (47 mid-brain, 45 canine leg, and 155 cardiac datasets) MICCAI 2012 Multi-Atlas Labeling Workshop and Challenge (30 subjects, 134 consistent labels, provided by Neuromorphometrics -- see below) Neuromorphometrics (Currently 63 subjects with 157 regions, but available only with paid subscription, see also NITRC project page) Mindboggle (101 subjects, 31 cortical regions per hemisphere, no subcortical structures) LPBA40 (40 subjects, 56 regions) NIREP NA0 (16 subjects, 32 gray matter regions) Internet Brain Segmentation Repository (IBSR) (version 2 has 18 subjects with 34 regions) Arno Klein's registration evaluation data (Klein et al., 2009) (includes CUMC12 and MGH10) Hammers' Individual Adult Brain Atlases (20 subjects, 67 regions) Child and Adolescent NeuroDevelopment Initiative (CANDI) (103 subjects with CMA segmentations) Other atlas listings Atlas & Template (Chuang's Lab) Human brain atlas Cortical Atlas Parcellations (MNI-Space) from Lead-DBS