Software Tools For Molecular Microscopy/Utilities

Utilities BBHP/Suprim add-ons http://coan.burnham.org/other-projects Two plugins for the Burnham-Brandeis Helical Package and/or Suprim, tkfilter for tomogram symmetry filtering and tkstraighten for boxing and straightening helical filaments. coan@burnham.org MRC Free for academic users unpublished crop http://emlab.rose2.brandeis.edu/software Program for cutting sections out of 2D and 3D density maps. 1.0 niko @brandeis.edu Linux/Mac MRC Free/Open Source GPL unpublished diffmap http://emlab.rose2.brandeis.edu/software Program to calculate difference maps between two density maps. 1.12 niko @brandeis.edu Linux/Mac MRC Free/Open Source GPL unpublished em2em http://www.imagescience.de/em2em.html Program to convert images (2D images and 3D volumes) from/to formats typically used in the EM community. em2em@ImageScience.de Most platforms (Linux/Unix, Mac OS X (intel), MS Windows) Most formats (IMAGIC, Spider, CCP4, MRC, CCP4, TIFF, etc.) Free unpublished Matlab functions for 3dEM file formats http://www.mathworks.com/matlabcentral/fileexchange/27021 Fred Sigworth MATLAB-supported systems Imagic, MRC and DM3 Free/Open Source BSD license MATLAB Unpublished MoniTEM http://cores.imp.ac.at/monitem A software tool for the Tecnai and Titan platform of TEMs designed to increase system uptime by constant monitoring. 1.0.1 Guenter Resch <guenter.resch@imba.oeaw.ac.at> Windows n/a Free Brunner, M. J., and Resch, G. P. (2009): Automated monitoring to reduce electron microscope downtime. Ultramicroscopy 109, 1389-92.