SPM/Docker

__NOTOC__ Docker Docker is a container technology, performing operating-system-level virtualisation. https://www.docker.com/ Singularity Singularity is another container technology that performs operating-system-level virtualization. One of the main uses of Singularity is to bring containers and reproducibility to scientific computing and HPC. https://sylabs.io/singularity/ https://apptainer.org/ SPM Containers Official SPM12 Dockerfile and singularity.def (using the Standalone SPM): https://github.com/spm/spm-docker https://github.com/spm/spm-docker/pkgs/container/spm-docker https://hub.docker.com/r/spmcentral/spm/ For example, to start SPM with its graphical user interface: xhost +local:docker docker run -ti --rm -e DISPLAY=$DISPLAY -v /tmp:/tmp -v /tmp/.X11-unix:/tmp/.X11-unix spmcentral/spm fmri If the container's root filesystem is mounted as read only (--read-only flag), you need to bind mount an extra volume: -v /tmp/.matlab:/root/.matlab See also Neurodesk https://www.neurodesk.org/ Neurodocker https://github.com/ReproNim/neurodocker https://hub.docker.com/r/kaczmarj/neurodocker/ SPM BIDS-App https://github.com/BIDS-Apps/SPM https://hub.docker.com/r/bids/spm/ MATLAB Dockerfile https://github.com/mathworks-ref-arch/matlab-dockerfile Singularity SingularityCE User Guide sudo singularity build spm12.sif spm12-octave.def singularity exec spm12.sif ./spm12.sif --help (how to install singularity on Ubuntu)